Analyses

The "Analysis" model in Pluto is a configurable recipe for running a bioinformatics pipeline

• Differential expression analysis
• Gene set enrichment analysis (GSEA)
• t-distributed Stochastic Neighbor Embedding (t-SNE)
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• Choosing between MACS2 and SEACR for peak calling with DNA Sequencing datasets
• Summary analysis (CPM-normalized)
• Uniform Manifold Approximation and Projection (UMAP)
• Principal components analysis (PCA)
• Peak analysis
• Adding comparisons for gene set enrichment analysis
• Longitudinal analysis
• Change log: Analyses
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• Survival analysis
• Coverage Analysis
• Summary Analysis
• Clustering (differential features)
• Transcription factor enrichment analysis (TFEA)