company logo
Pluto Knowledge Base
  • pluto.bio
Analyses
  • Getting Started
    • SAML Single Sign On
  • Experiments
  • Analyses
  • Plots
  • Integrations
  • Sharing and Security
  • Explore
  • Solutions
  • Experiment Pipeline Methods
  • Reference: Analysis Terms & Methods
  • Data Management
      Back to home
      1. Pluto Knowledge Base
      2. Analyses
      • Getting Started
        • SAML Single Sign On
      • Experiments
      • Analyses
      • Plots
      • Integrations
      • Sharing and Security
      • Explore
      • Solutions
      • Experiment Pipeline Methods
      • Reference: Analysis Terms & Methods
      • Data Management

      Analyses

      The "Analysis" model in Pluto is a configurable recipe for running a bioinformatics pipeline
      • Differential expression analysis
      • Gene set enrichment analysis (GSEA)
      • t-distributed Stochastic Neighbor Embedding (t-SNE)
      • Text
      • Choosing between MACS2 and SEACR for peak calling with DNA Sequencing datasets
      • Summary analysis (CPM-normalized)
      • Uniform Manifold Approximation and Projection (UMAP)
      • Principal components analysis (PCA)
      • Peak analysis
      • Adding comparisons for gene set enrichment analysis
      • Longitudinal analysis
      • Change log: Analyses
      • Images
      • Survival analysis
      • Coverage Analysis
      • Summary Analysis
      • Clustering (differential features)
      • Transcription factor enrichment analysis (TFEA)
      company logo
      Pluto Bio Help Center
      • pluto.bio