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Analyses
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Experiment Pipeline Methods
Reference: Analysis Terms & Methods
Data Management
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Pluto Knowledge Base
Analyses
Getting Started
SAML Single Sign On
Experiments
Analyses
Plots
Integrations
Sharing and Security
Explore
Solutions
Experiment Pipeline Methods
Reference: Analysis Terms & Methods
Data Management
Analyses
The "Analysis" model in Pluto is a configurable recipe for running a bioinformatics pipeline
Differential expression analysis
Gene set enrichment analysis (GSEA)
t-distributed Stochastic Neighbor Embedding (t-SNE)
Text
Choosing between MACS2 and SEACR for peak calling with DNA Sequencing datasets
Summary analysis (CPM-normalized)
Uniform Manifold Approximation and Projection (UMAP)
Principal components analysis (PCA)
Peak analysis
Adding comparisons for gene set enrichment analysis
Longitudinal analysis
Change log: Analyses
Images
Survival analysis
Coverage Analysis
Summary Analysis
Clustering (differential features)
Transcription factor enrichment analysis (TFEA)