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Reference: Analysis Terms & Methods
Getting Started
Anatomy of your Lab Space
Your Account
Organization Settings
Manage Access
Experiments
Experiment types in Pluto
Data inputs and outputs
Single cell
Experiment actions and resources
Analyses
Summary
Pathway
Dimensionality reduction
Clinical outcomes
Comparative
Content
Genome
Plots
Data Management
Literature
Integrations
Sharing and Security
Explore
Solutions
Pipelines
Reference: Analysis Terms & Methods
Software Packages
Sequencing
Statistics
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Pluto Knowledge Base
Reference: Analysis Terms & Methods
Getting Started
Anatomy of your Lab Space
Your Account
Organization Settings
Manage Access
Experiments
Experiment types in Pluto
Data inputs and outputs
Single cell
Experiment actions and resources
Analyses
Summary
Pathway
Dimensionality reduction
Clinical outcomes
Comparative
Content
Genome
Plots
Data Management
Literature
Integrations
Sharing and Security
Explore
Solutions
Pipelines
Reference: Analysis Terms & Methods
Software Packages
Sequencing
Statistics
Reference: Analysis Terms & Methods
Details and useful links to statistical methods and tools used throughout Pluto
Introduction to Proteomics
Software Packages
What is EdgeR?
What is DESeq2?
What is RSEM? | Pluto Help Center
What is Glimma?
What is Trim Galore?
What is SAMtools?
What is FASTQC?
What is Kallisto?
What is RSeQC?
What is SortMeRNA?
What is STAR?
See more
Sequencing
Introduction to RNA-seq
What is paired-end sequencing?
Where does variance come from in RNA-seq data?
What are adapters?
What is fold change?
What is a reference genome?
What is multiplexing?
What QC information does Pluto provide for RNA-seq analysis?
What is depth of sequencing?
What is a FASTQ file?
What is FPKM?
What is TPM?
What is RPKM?
What is the read-count?
See more
Statistics
SD versus SEM
Statistical tests for comparing groups of samples
What is voom?
