What QC information does Pluto provide for RNA-seq analysis?
Uploading FASTQs will output a detailed MultiQC report
Written by Rani Powers, PhD
Pluto helps streamline your RNA-seq analysis by allowing you to upload FASTQ files, and easily generate a count matrix and perform differential expression analysis.
During FASTQ file processing, Pluto's RNA-seq pipeline outputs a MultiQC report, which provides detailed information about your samples through every step of the process.
![](https://help.pluto.bio/hubfs/Knowledge%20Base%20Import/downloads.intercomcdn.comio40555013631aedb4b018966303c3351cbimage.png)
To obtain the MultiQC report for your experiment, just ask us for it using the chat bubble at the bottom right.
![](https://help.pluto.bio/hubfs/Knowledge%20Base%20Import/downloads.intercomcdn.comio4055520482ac2ce3155f780edb2c992b6Group+543.png)