Sequencing-based experiments can be affected by uneven sequencing depth across samples. To normalize for this when plotting assay data measuring raw counts, use the Summary (CPM-normalized) analysis.
Select one or more targets to summarize, and choose one or more variables to group samples by. Click "Run Analysis" to perform counts per million (CPM) normalization on your raw count data.
CPM-normalized data can be visualized with plots such as bar plots, boxplots, and heatmaps. Use the "Plot" tab in the sidebar to customize your visualization.