Analyses

The "Analysis" model in Pluto is a configurable recipe for running a bioinformatics pipeline

7 articles in this collection
Written by Rani Powers, PhD, MacKenzie Demmel, and Andrew Goodspeed

Summary analysis (CPM-normalized)

Use counts per million (CPM) normalization for assay data measuring raw counts

Written by Rani Powers, PhD
Updated over a week ago

Principal components analysis (PCA)

Use PCA dimensionality reduction

Written by MacKenzie Demmel
Updated over a week ago

Differential expression analysis

Compare genome-wide gene expression profiles across two groups

Written by Rani Powers, PhD
Updated over a week ago

Gene set enrichment analysis (GSEA)

Calculate enrichment scores for gene sets from the MSigDB

Written by Andrew Goodspeed
Updated this week

Adding comparisons for gene set enrichment analysis

Run differential expression to create a comparison for GSEA

Written by Rani Powers, PhD
Updated over a week ago

Survival analysis

Overview of data formatting and methods for survival analysis

Written by Andrew Goodspeed
Updated over a week ago

Images

Upload images to be analyzed alongside your interactive plots

Written by MacKenzie Demmel
Updated over a week ago