Go to Pluto
All Collections
Experiment pipeline methods

Experiment pipeline methods

Standard methods for Pluto's "out-of-the-box" pipelines

5 articles
Rani Powers, PhD avatarAndrew Goodspeed avatar
Written by Rani Powers, PhD and Andrew Goodspeed

What is a pipeline?

Bioinformatics pipelines transform raw data into processed data that can be analyzed & visualized in Pluto
Rani Powers, PhD avatar
Written by Rani Powers, PhD. Updated over a week ago

Standard ChIP-seq parameters in Pluto

Methods for the out-of-the-box ChIP-seq pipeline (nf-core/chipseq)
Andrew Goodspeed avatar
Written by Andrew Goodspeed. Updated over a week ago

Standard CUT&RUN parameters in Pluto

Methods for the out-of-the-box ChIP-seq pipeline (nf-core/cutandrun)
Andrew Goodspeed avatar
Written by Andrew Goodspeed. Updated over a week ago

Standard PRO-seq parameters in Pluto

Methods for the out-of-the-box PRO-seq pipeline
Andrew Goodspeed avatar
Written by Andrew Goodspeed. Updated over a week ago

Standard RNA-seq parameters in Pluto

Methods for the out-of-the-box RNA-seq pipeline (nf-core/rnaseq)
Andrew Goodspeed avatar
Written by Andrew Goodspeed. Updated over a week ago