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Experiments

The "Experiment" model in Pluto is a container for storing raw data and running analyses

12 articles
Rani Powers, PhD avatarMacKenzie Demmel avatarAndrew Goodspeed avatar
Written by Rani Powers, PhD, MacKenzie Demmel and Andrew Goodspeed

Selecting strandedness for RNA-seq

Protocols can produce unstranded or stranded (forward/reverse) data
Rani Powers, PhD avatar
Written by Rani Powers, PhD. Updated over a week ago

What kinds of experiment can I analyze with Pluto?

Pluto supports diverse set of low-throughput and high-throughput assays
Rani Powers, PhD avatar
Written by Rani Powers, PhD. Updated over a week ago

Rerunning a pipeline on an experiment

Copy the experiment to run a new pipeline and compare the results
Rani Powers, PhD avatar
Written by Rani Powers, PhD. Updated over a week ago

Bulk RNA sequencing

Transform FASTQ files into interactive results pages with a few clicks
Rani Powers, PhD avatar
Written by Rani Powers, PhD. Updated over a week ago

Biological entity annotations in experiments

Pluto enriches genes, proteins, and other targets in sample & assay data
Rani Powers, PhD avatar
Written by Rani Powers, PhD. Updated over a week ago

Clone an experiment

Create a fresh copy of an experiment for analyzing
MacKenzie Demmel avatar
Written by MacKenzie Demmel. Updated over a week ago

Experiment provenance

Easily track how and when experiments are cloned
Rani Powers, PhD avatar
Written by Rani Powers, PhD. Updated over a week ago

Importing & editing experiment sample data

Add or modify columns in your sample data to reflect the different variables in your experiment
MacKenzie Demmel avatar
Written by MacKenzie Demmel. Updated over a week ago

Importing experiment assay data: FASTQ files

Pluto supports FASTQ file upload via drag and drop and other methods
Andrew Goodspeed avatar
Written by Andrew Goodspeed. Updated over a week ago

Importing experiment assay data: cloud locations

Pluto can help you import large data files from a variety of sources
Rani Powers, PhD avatar
Written by Rani Powers, PhD. Updated over a week ago

Experiment attachments

Store protocols, documents, images, and other information relevant to the experiment on the Attachments tab
MacKenzie Demmel avatar
Written by MacKenzie Demmel. Updated over a week ago

Experiment change history

Track changes made to experiments and visualizations over time
Rani Powers, PhD avatar
Written by Rani Powers, PhD. Updated over a week ago