Analyses
The "Analysis" model in Pluto is a configurable recipe for running a bioinformatics pipeline
10 articles

Written by Rani Powers, PhD, Andrew Goodspeed and MacKenzie Demmel



Differential expression analysis
Compare genome-wide gene expression profiles across two groups
Written by Rani Powers, PhD. Updated over a week ago
Longitudinal analysis
Analyze data collected across repeated measures in one or more groups
Written by Rani Powers, PhD. Updated over a week ago
Adding comparisons for gene set enrichment analysis
Run differential expression to create a comparison for GSEA
Written by Rani Powers, PhD. Updated over a week ago
Gene set enrichment analysis (GSEA)
Calculate enrichment scores for gene sets from the MSigDB
Written by Andrew Goodspeed. Updated over a week ago
Summary analysis (CPM-normalized)
Use counts per million (CPM) normalization for assay data measuring raw counts
Written by Rani Powers, PhD. Updated over a week ago
Peak analysis
Analyze peaks across the whole genome
Written by Rani Powers, PhD. Updated over a week ago
Principal components analysis (PCA)
Use PCA dimensionality reduction
Written by MacKenzie Demmel. Updated over a week ago
Survival analysis
Overview of data formatting and methods for survival analysis
Written by Andrew Goodspeed. Updated over a week ago
Images
Upload images to be analyzed alongside your interactive plots
Written by MacKenzie Demmel. Updated over a week ago
Change log: Analyses
Version updates to Pluto's out-of-the-box analyses
Written by Rani Powers, PhD. Updated over a week ago