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Analyses
The "Analysis" model in Pluto is a configurable recipe for running a bioinformatics pipeline
9 articles in this collection
Written by
Rani Powers, PhD,
MacKenzie Demmel,
and
Andrew Goodspeed
Differential expression analysis
Compare genome-wide gene expression profiles across two groups
Written by
Rani Powers, PhD
Updated over a week ago
Adding comparisons for gene set enrichment analysis
Run differential expression to create a comparison for GSEA
Written by
Rani Powers, PhD
Updated over a week ago
Gene set enrichment analysis (GSEA)
Calculate enrichment scores for gene sets from the MSigDB
Written by
Andrew Goodspeed
Updated over a week ago
Summary analysis (CPM-normalized)
Use counts per million (CPM) normalization for assay data measuring raw counts
Written by
Rani Powers, PhD
Updated over a week ago
Peak analysis
Analyze peaks across the whole genome
Written by
Rani Powers, PhD
Updated over a week ago
Principal components analysis (PCA)
Use PCA dimensionality reduction
Written by
MacKenzie Demmel
Updated over a week ago
Survival analysis
Overview of data formatting and methods for survival analysis
Written by
Andrew Goodspeed
Updated over a week ago
Images
Upload images to be analyzed alongside your interactive plots
Written by
MacKenzie Demmel
Updated over a week ago
Change log: Analyses
Version updates to Pluto's out-of-the-box analyses
Written by
Rani Powers, PhD
Updated over a week ago