Getting Started: Pluto

Handy guides to help you make the most of Pluto

Rani Powers, PhD avatar MacKenzie Demmel avatar Andrew Goodspeed avatar
10 articles in this collection
Written by Rani Powers, PhD, MacKenzie Demmel, and Andrew Goodspeed

Managing your account

Invited to collaborate on Pluto? Here's how to create & manage your account.
MacKenzie Demmel avatar
Written by MacKenzie Demmel
Updated over a week ago

Configure SAML Single Sign-On for Pluto

Enterprise plans using SSO need to complete a few configuration steps
Rani Powers, PhD avatar
Written by Rani Powers, PhD
Updated over a week ago

Experiment attachments

Store protocols, documents, images, and other information relevant to the experiment on the Attachments tab
MacKenzie Demmel avatar
Written by MacKenzie Demmel
Updated over a week ago

Experiments: Bulk RNA-seq

Transform FASTQ files into interactive results pages with a few clicks
Rani Powers, PhD avatar
Written by Rani Powers, PhD
Updated over a week ago

Survival analysis in Pluto

Overview of data formatting and methods for survival analysis
Andrew Goodspeed avatar
Written by Andrew Goodspeed
Updated over a week ago

Analysis: Differential expression

Compare genome-wide gene expression profiles across two groups
Rani Powers, PhD avatar
Written by Rani Powers, PhD
Updated over a week ago

Analysis: Gene set enrichment

Calculate enrichment scores for gene sets from the MSigDB
Andrew Goodspeed avatar
Written by Andrew Goodspeed
Updated over a week ago

Add comparisons for gene set enrichment analysis

Run differential expression to create a comparison for GSEA
Rani Powers, PhD avatar
Written by Rani Powers, PhD
Updated over a week ago

Can Pluto submit my data to GEO?

Yes! Pluto takes care of public database submissions for you
Rani Powers, PhD avatar
Written by Rani Powers, PhD
Updated over a week ago

Importing raw data: FASTQ files

Pluto supports FASTQ file upload via drag and drop and other methods
Andrew Goodspeed avatar
Written by Andrew Goodspeed
Updated over a week ago